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Table 5 The five platforms' feature of "Gold standard dataset".

From: Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data

 

Bonferroni FWE = 0.05

FDR = 0.05

Platform

AC

SN

SP

FDR

AC

SN

SP

FDR

AFX

0.77

0.76

0.95

0.004

0.92

0.94

0.55

0.024

ABI

0.74

0.73

0.95

0.004

0.89

0.91

0.59

0.023

AG1

0.81

0.80

0.95

0.003

0.92

0.94

0.55

0.024

ILM

0.55

0.53

0.99

0.001

0.88

0.88

0.95

0.003

GEH

0.54

0.52

0.95

0.005

0.82

0.82

0.69

0.019

  1. "Gold standard dataset": Accuracy (AC), sensitivity (SN), specificity (SP), and the true FDR for the five platforms using the Bonferroni (FWE = 0.05) and FDR = 0.05 as threshold cutoff.
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BMC Bioinformatics

ISSN: 1471-2105

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