NKI dataset, summary tables results and comparison with Bergamaschi et al. Summary of the aberrations per chromosome arm for the four different subtypes (Basal, ERBB2, Luminal A or Luminal B). The numbers in the top of the tables denotes the chromosomes. A arm is indicated with a red color when a significant region is found on that arm that shows a deletion of the DNA-probes of interest. Similarly, green indicates amplification. The gray boxes indicate that the aberration was not present in the class of interest but in the rest of the samples. The top and the bottom tables show the aberrations found with the SIRAC algorithm on the NKI dataset for two different values of the FDR, i.e. FDR < 0.005 and FDR < 0.05 respectively. The middle table presents the results of Bergamaschi et al.  on their breast cancer dataset.