Table 2 Various Scores for Comparison
From: SABERTOOTH: protein structural alignment based on a vectorial structure representation
SABERT. (EC profile) | SABERT. (revised PE) | MAMMOTH | MAMMOTH mult | DaliLite | TM-align | CE | SHEBA | |
|---|---|---|---|---|---|---|---|---|
rPSI/% | 67.8 ± 1.1 | 67.0 ± 1.1 | 51.3 ± 0.9 | 71.0 ± 1.2 | 73.6 ± 1.2 | 71.5 ± 1.2 | 64.2 ± 1.1 | 65.1 ± 1.1 |
PSI/% | 68.2 ± 1.1 | 67.4 ± 1.1 | 51.3 ± 0.9 | 71.6 ± 1.2 | 73.7 ± 1.2 | 75.3 ± 1.3 | 64.6 ± 1.1 | 73.5 ± 1.2 |
cRMSD/Å | 5.75 ± 0.10 | 5.84 ± 0.10 | 8.82 ± 0.15 | 5.63 ± 0.09 | 4.95 ± 0.08 | 2.85 ± 0.05 | 4.15 ± 0.07 | 5.12 ± 0.09 |
cRMSD/Å (core only) | 1.90 ± 0.03 | 1.91 ± 0.03 | 1.91 ± 0.03 | 1.90 ± 0.03 | 1.86 ± 0.03 | 1.84 ± 0.03 | 1.91 ± 0.03 | 1.81 ± 0.03 |
aligned residues | 395537 | 392528 | 410541 | 399948 | 392515 | 379196 | 340586 | 373857 |
contact overlap | 57.3 ± 0.9 | 56.3 ± 0.9 | 44.7 ± 0.7 | 57.8 ± 1.0 | 61.0 ± 1.0 | 58.7 ± 1.0 | 50.3 ± 0.8 | 54.2 ± 0.9 |
rseqSim | 8.0 ± 0.1 | 7.3 ± 0.1 | -8.8 ± 0.1 | 6.4 ± 0.1 | 14.1 ± 0.2 | 15.4 ± 0.3 | 9. ± 0.1 | 15.8 ± 0.2 |
seqSim | 8.1 ± 0.1 | 7.3 ± 0.1 | -8.9 ± 0.1 | 6.0 ± 0.1 | 13.5 ± 0.2 | 11.2 ± 1.0 | 8.4 ± 0.1 | 9.4 ± 0.2 |
alignments rPSI< 40% | 268/7.5% | 262/7.3% | 1014/28.4% | 150/4.2% | 18/0.5% | 56/1.6% | 483/13.5% | 232/6.5% |