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Table 1 Data coverage in the DAVID Knowledgebase.

From: DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis

Gene Identifiers (> 60 millions)

Annotation Contents (> 90 millions in total)

AFFY_ID

Ontology (>40 million records)

Domain/Family (> 15 millions)

General Annotation (>21 millions)

ENTREZ_GENE_ID

GO_BIOLOGICAL PROCESS

BLOCKS_ID

ALIAS_GENE_SYMBOL

GENPEPT_ACCESSION

GO_MOLECULAR FUNCTION

COG_KOG_NAME

CHROMOSOME

GENBANK_ACCESSION

GO_CELLULAR COMPONENT

INTERPRO_NAME

CYTOBAND

GI

PANTHER_BIOLOGICAL PROCESS

PDB_ID

GENE_NAME

PIR_ACCESSION

PANTHER_MOLECULAR FUNCTION

PFAM_NAME

GENE_SYMBOL

PIR_ID

COG_KOG_ONTOLOGY

PIR_ALN

HOMOLOGOUS_GENE

PIR_NREF_ID

P-P Interaction (> 4 millions)

PIR_HOMOLOGY_DOMAIN

LL_SUMMARY

REFSEQ_GENOMIC

BIND

PIR_SUPERFAMILY_NAME

OMIM_ID

REFSEQ_MRNA

DIP

PRINTS_NAME

PIR_SUMMARY

REFSEQ_PROTEIN

MINT

PRODOM_NAME

PROTEIN_MW

REFSEQ_RNA

NCICB_CAPATHWAY

PROSITE_NAME

REFSEQ_PRODUCT

UNIGENE

TRANSFAC_ID

SCOP_ID

SEQUENCE_LENGTH

UNIPROT_ACCESSION

HIV_INTERACTION

SMART_NAME

SP_COMMENT

UNIPROT_ID

HIV_INTERACTION_CATEGORY

TIGRFAMS_NAME

Functional Category (>6.9 millions)

UNIREF100_ID

HPRD_INTERACTION

PANTHER_SUBFAMILY

PIR_SEQ_FEATURE

OFFICIAL_GENE_SYMBOL

REACTOME_INTERACTION

PANTHER_FAMILY

SP_COMMENT_TYPE

ESSENBLE_ID

Disease Association (~9,000)

Pathways (>50,000)

SP_PIR_KEYWORDS

FLYBASE_ID

GENETIC_ASSOCIATION_DB

BioCarta

UP_SEQ_FEATURE

HAMAP_ID

OMIM_PHENOTYPE

KEGG_PATHWAY

Gene Expression (>1.0 million)

HSSP_ID

Literature (>2.8 millions)

PANTHER_PATHWAY

GNF Microarray

TIGR_ID

GENERIF_SUMMARY

PID

UNIGENE EST

WORMBASE_ID

PUBMED_ID

BBID

CGAP SAGE

RGD_ID

HIV_INTERACTION_PUBMED_ID

KEGG_REACTION

CGAP EST

UNIPROT_ACCESSION

   
  1. Comprehensive collection and integration of different types of gene identifiers and heterogeneous annotation categories. Importantly, any of the gene identifier types and associated annotation categories above are comprehensively cross-mapped to each other in the DAVID Knowledgebase by the unique DAVID Gene Concept procedure.