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Table 5 HMMER-SAM Significance Results

From: Improving model construction of profile HMMs for remote homology detection through structural alignment

HMMER-CLUSTALW × SAM-CLUSTALW

0.01

HMMER-TCOFFEE × SAM-TCOFFEE

10 -4

HMMER-MAFFT × SAM-MAFFT

10 -6

HMMER-PROBCONS × SAM-PROBCONS

10 -6

HMMER-3DCOFFEE × SAM-3DCOFFEE

10 -5

HMMER-MAMMOTH × SAM-MAMMOTH

10 -5

  1. Paired two tailed results when comparing performance of HMMER and SAM for the all the multiple alignment tools.