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Table 5 HMMER-SAM Significance Results

From: Improving model construction of profile HMMs for remote homology detection through structural alignment

HMMER-CLUSTALW × SAM-CLUSTALW 0.01
HMMER-TCOFFEE × SAM-TCOFFEE 10 -4
HMMER-MAFFT × SAM-MAFFT 10 -6
HMMER-PROBCONS × SAM-PROBCONS 10 -6
HMMER-3DCOFFEE × SAM-3DCOFFEE 10 -5
HMMER-MAMMOTH × SAM-MAMMOTH 10 -5
  1. Paired two tailed results when comparing performance of HMMER and SAM for the all the multiple alignment tools.