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Table 2 The used treatments and time shifts

From: Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana

Regulator

Used treatments

Used shift:Best shift

AREB

osmotic-S, salt-S

0:0 0:2

CBF (Induced)

cold-S, cold-R

2:2 2:2

CBF (Repressed)

cold-S, cold-R, drought-R

2:2 2:2 1:0

DREB2A

genotoxic-R, wounding-S, cold-R, cold-S, osmotic-S

1:0 0:0 2:1 2:1 0:0

HSFA2

drought-R, oxidative-R, oxidative-S, heat-S, heat-R

0:0 0:0 1:0 0:0 0:0

HY5

uvb-R, cold-S, uvb-S

0:0 1:0 0:0

MBF1c (Induced)

osmotic-R, heat-S, heat-R

0:2 0:1 0:0

MBF1c (Repessed)

oxidative-S, cold-R, heat-S, heat-R

1:1 0:0 0:0 0:0

MYC2-MYB2

salt-R, drought-R

0:2 0:1

NAC019

uvb-S, osmotic-R, salt-R osmotic-S, salt-S

0:1 0:0 0:0 0:1 0:0

NAC055

cold-R, osmotic-R, salt-R

0:0 0:1 0:0

NAC072

osmotic-S, salt-S

0:1 0:1

PAP1

osmotic-S, salt-S

0:2 0:2

ZAT12 (Induced)

osmotic-R, cold-R, salt-R

0:2 0:0 0:0

ZAT12 (Repressed)

drought-R, oxidative-R, cold-R, salt-R

0:0 0:0 0:2 0:0

  1. The treatments and time shifts CERMT selected for the real data. Also shown are the 'best' time lags based on maximizing the covariance between the TF and the experimentally determined regulon. These data can be useful for interpreting the biological relevance of the predicted regulon. Treatments ending with 'S' and 'R' are from shoot and root respectively.