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Table 8 Comparison of Performance on BM-Set2

From: Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

Type

Allele

AUC

  

SVRMHC

Gibbs

ARB

TEPITOPE

NetMHCII

MOEA

Mouse

I-Ab

-

-

0.662

-

0.908

0.919

 

I-Ad

-

-

0.819

-

0.818

0.855

 

I-As

-

-

-

-

0.898

0.889

HLA

DRB1-0101

0.623

0.676

0.666

0.647

0.716

0.651

 

DRB1-0301

-

0.722

0.799

0.734

0.765

0.778

 

DRB1-0401

0.739

0.759

0.737

0.754

0.758

0.725

 

DRB1-0404

-

0.743

0.788

0.829

0.785

0.786

 

DRB1-0405

0.701

0.724

0.724

0.790

0.735

0.756

 

DRB1-0701

-

0.695

0.749

0.768

0.787

0.735

 

DRB1-0802

-

0.721

0.803

0.769

0.756

0.773

 

DRB1-0901

-

0.734

0.711

-

0.775

0.712

 

DRB1-1101

-

0.715

0.727

0.710

0.734

0.759

 

DRB1-1302

-

0.716

0.917

0.720

0.818

0.820

 

DRB1-1501

0.730

0.672

0.792

0.726

0.736

0.743

 

DRB4-0101

-

0.742

0.800

-

0.736

0.759

 

DRB5-0101

0.649

0.618

0.677

0.653

0.664

0.660

  1. Comparison of AUC values from five-fold cross-validation of allele datasets given in BM-Set2. "-" indicates that the allele is unavailable for testing with the respective prediction method.
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BMC Bioinformatics

ISSN: 1471-2105

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