Figure 5
From: WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
WeederH output on the promoter and 5'UTR of the MYB gene (as defined in the ABS database). Highest scoring motif output by WeederH (top track), ABS annotated site (in green), sequence of the ABS database (S66422 – aligned with BLAT), and conserved regions predicted by RP score [27], light blue) and phastCons ([45], bottom track). Notice how both the latter methods predict conserved long regions spanning most of the promoter itself, making difficult the identification of single conserved TFBSs.