Figure 7
From: WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
WeederH identifies the promoter and the three annotated enhancers upstream of the mouse actin, alpha cardiac gene. Highest scoring motifs predicted by WeederH in the 10,000 bps region upstream of the ATG codon of the mouse actin alpha cardiac gene, displayed within the UCSC genome browser. Track "Weeder H motifs" shows the location of the motifs; the track "Weeder-H" 500 shows 500 bps regions in which the average 12-mer χ2 score is greater than 1. Track "Your sequence from Blat Search" shows the location of the original promoter retrieved from the ABS database. The three regions, other than the just upstream of the TSS (the promoter), match three experimentally known enhancers of the gene.