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Figure 3 | BMC Bioinformatics

Figure 3

From: In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation

Figure 3

Reporter off-target sensitivity and expression correlation. A boxplot showing the metacorrelation coefficients cor( ρ X i Y MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaacciGae8xWdi3aaSbaaSqaaiabdIfaynaaBaaameaacqWGPbqAaeqaaSGaemywaKfabeaaaaa@31CD@ , a i ) of all probe set pairs of the Affymetrix CDF, stratified by their off-target sensitivity score Q X Y 75 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaGaemyuae1aa0baaSqaaiabdIfayjabdMfazbqaaiabiEda3iabiwda1aaaaaa@3193@ . Only pairs with Q X Y 75 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaGaemyuae1aa0baaSqaaiabdIfayjabdMfazbqaaiabiEda3iabiwda1aaaaaa@3193@ ≥ 55 are included. The correlation coefficients were calculated on the intensities measured in the tissue dataset.

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