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Table 1 Statistics of probe set definitions. The first 2 rows contain the number of probe sets and reporters in the Affymetrix and the custom-made CDF. The number of reporters times the number of predicted transcripts, in the bottom row, results in the total number of reporter-to-transcript alignment scores (see also Figure 1).

From: In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation

 

CDF Affymetrix

Custom-made CDF

Number of probe sets:

22,810

19,937

Number of reporters:

251,078

217,811

Number of alignment scores:

6,926,739,864

6,008,969,868

Total number of transcripts in TAIR6:

27,588