Table 2 Table with some of the highest Needleman-Wunsch scores. P and M stand for the number of perfect and mismatch scores. Gap openings and extensions in the alignment were penalized with -50 and -0.5, respectively.
From: In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
Matches | Matches | Matches | Matches | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
P | M | Score | P | M | Score | P | M | Score | P | M | Score |
25 | 0 | 125 | 22 | 2 | 102 | 19 | 1 | 91 | 18 | 2 | 82 |
24 | 0 | 120 | 21 | 1 | 101 | 18 | 0 | 90 | 17 | 1 | 81 |
24 | 1 | 116 | 20 | 0 | 100 | 21 | 4 | 89 | 20 | 5 | 80 |
23 | 0 | 115 | 22 | 3 | 98 | 20 | 3 | 88 | 16 | 0 | 80 |
23 | 1 | 111 | 21 | 2 | 97 | 19 | 2 | 87 | 19 | 4 | 79 |
22 | 0 | 110 | 20 | 1 | 96 | 18 | 1 | 86 | 18 | 3 | 78 |
23 | 2 | 107 | 19 | 0 | 95 | 17 | 0 | 85 | 17 | 2 | 77 |
22 | 1 | 106 | 21 | 3 | 93 | 20 | 4 | 84 | 16 | 1 | 76 |
21 | 0 | 105 | 20 | 2 | 92 | 19 | 3 | 83 | 19 | 5 | 75 |