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Table 2 Parameters used in the computational experiment. "Posconstraint" and "negconstraint" are parameters used in GIST.

From: Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition

Location

Gap penalty

γ of RBF

Posconstraint

Negconstraint

c

w

cTP

0.4

2.5

1.000000

0.009853

10

20

mTP

0.4

2.5

0.151072

0.099261

10

20

SP

0.4

2.5

0.032387

0.008566

10

20

Other

0.4

2.5

0.039955

0.008566

10

20

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BMC Bioinformatics

ISSN: 1471-2105

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