Direct maximum parsimony phylogeny reconstruction from genotype data

BMC Bioinformatics

Table 2 Positive and negative errors for indirect phylogeny inference with varying sample sizes

SNPs	Method	n_H= 30	40	50	60	70	80	90	100	110	120
5	fastPHASE positive errors	10	12	15	14	11	15	25	15	10	10
5	fastPHASE negative errors	16	12	14	14	10	12	10	13	13	8
5	haplotyper positive errors	5	6	7	10	3	11	12	7	5	4
5	haplotyper negative errors	18	12	15	17	9	15	14	14	14	11
10	fastPHASE positive errors	38	32	43	34	31	41	46	53	41	38
10	fastPHASE negative errors	26	25	19	18	14	17	23	22	24	22
10	haplotyper positive errors	32	26	31	28	35	23	36	30	23	14
10	haplotyper negative errors	27	27	22	22	17	25	28	28	34	26

The table separates the phylogenetic errors from the experiments of Figure 3 into positive and negative errors for indirect phylogeny inference using fastPHASE and haplotyper.

ISSN: 1471-2105