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Table 2 Positive and negative errors for indirect phylogeny inference with varying sample sizes

From: Direct maximum parsimony phylogeny reconstruction from genotype data

SNPs Method n H = 30 40 50 60 70 80 90 100 110 120
5 fastPHASE positive errors 10 12 15 14 11 15 25 15 10 10
5 fastPHASE negative errors 16 12 14 14 10 12 10 13 13 8
5 haplotyper positive errors 5 6 7 10 3 11 12 7 5 4
5 haplotyper negative errors 18 12 15 17 9 15 14 14 14 11
10 fastPHASE positive errors 38 32 43 34 31 41 46 53 41 38
10 fastPHASE negative errors 26 25 19 18 14 17 23 22 24 22
10 haplotyper positive errors 32 26 31 28 35 23 36 30 23 14
10 haplotyper negative errors 27 27 22 22 17 25 28 28 34 26
  1. The table separates the phylogenetic errors from the experiments of Figure 3 into positive and negative errors for indirect phylogeny inference using fastPHASE and haplotyper.