Table 1 The percentage of the edges (pocket pairs) related to similar GO terms in pocket similarity network which is constructed by using the E-value of sequence similarity between two pockets as the threshold.
From: Predicting gene ontology functions from protein's regional surface structures
Threshold | 1.0 × 10-1 | 1.0 × 10-2 | 1.0 × 10-3 | 1.0 × 10-4 | 1.0 × 10-5 |
|---|---|---|---|---|---|
Pocket pairs | 3178 | 1460 | 652 | 320 | 219 |
GO annotated pairs | 2359 | 1086 | 492 | 241 | 160 |
Similar pairs | 581 | 375 | 252 | 178 | 126 |
Percentage | 24.63% | 34.53% | 51.21% | 73.85% | 78.75% |