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Table 2 The percentage of the edges (pocket pairs) related to similar GO terms in pocket similarity network which is constructed by using the p-value of structure cRMSD similarity between two pockets as the threshold.

From: Predicting gene ontology functions from protein's regional surface structures

Threshold

1.0 × 10-1

1.0 × 10-2

1.0 × 10-3

1.0 × 10-4

1.0 × 10-5

Pocket pairs

1002

602

521

481

468

GO annotated pairs

778

501

437

405

397

Similar pairs

508

464

430

403

396

Percentage

65.29%

92.61%

98.40%

99.50%

99.75%