Table 4 The percentage of the edges (pocket pairs) related to similar GO terms in pocket similarity network which is constructed by using the combination of E-value of sequence similarity and p-value of structure cRMSD similarity between two pockets as the threshold.
From: Predicting gene ontology functions from protein's regional surface structures
Threshold | 1.0 × 10-1 | 1.0 × 10-2 | 1.0 × 10-3 | 1.0 × 10-4 | 1.0 × 10-5 |
|---|---|---|---|---|---|
Pocket pairs | 711 | 360 | 257 | 189 | 145 |
GO annotated pairs | 551 | 293 | 203 | 148 | 109 |
Similar pairs | 402 | 287 | 203 | 148 | 109 |
Percentage | 72.95% | 97.95% | 100% | 100% | 100% |