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Table 5 The prediction results of proteins by the three GO ontologies individually. These results are similar to the integrated version, and show that the performance of the proposed prediction method does not heavily depend on the considered GO terms. For Gene Ontologies, C means cellular component, F means molecular function, and P means biological process. The proteins with R & P 100% mean that these proteins can be predicted with recall value 1 and precision value 1.

From: Predicting gene ontology functions from protein's regional surface structures

Gene Ontology

C

F

P

Maximum F-measure

0.823

0.778

0.772

Recall-precision

(0.839, 0.805)

(0.797, 0.729)

(0.792, 0.715)

Number of proteins

92

290

275

Predicted proteins

81

249

233

Not predicted

11

41

42

Proteins with recall 100%

74

207

202

Proteins with precision 100%

69

174

166

Proteins with R & P 100%

66

155

150