Table 7 Some predicted GO terms of the un-annotated proteins. The predicted results are almost consistent with the existing functional knowledge in databases and literature. The full predicted results of all un-annotated proteins in the considered pocket similarity network can be found at our website.
From: Predicting gene ontology functions from protein's regional surface structures
Protein | Predicted GO terms | GO description | Information |
|---|---|---|---|
1orn | GO:0003677 F | DNA binding | PDB Classification: Hydrolase/dna |
| Â | GO:0019104 F | DNA N-glycosylase activity | Â |
| Â | GO:0003906 F | DNA-(apurinic or apyrimidinic site) lyase activity | Â |
1lia | GO:0009503 C | light-harvesting complex (sensu Viridiplantae) | PDB Classification: Light Harvesting Protein |
| Â | GO:0015979 P | photosynthesis | PMID: 11134927 |
1dnl | GO:0010181 F | FMN binding | PDB Classification: Oxidoreductase |
| Â | GO:0004733 F | pyridoxamine-phosphate oxidase activity [source: EC:1.4.3.5] | EC no.: 1.4.3.5 |
1jbe | GO:0004871 F | signal transducer activity | PDB Classification: Signaling Protein |
| Â | GO:0000160 P | two-component signal transduction system (phosphorelay) | PMID: 12270703 |
1uap | GO:0005509 F | calcium ion binding | PDB Classification: Protein Binding |
| Â | GO:0004252 F | serine-type endopeptidase activity | PMID: 12670942 |
1fb3 | GO:0016491 F | oxidoreductase activity | PDB Classification: Oxidoreductase |
| Â | GO:0004324 F | ferredoxin-NADP+ reductase activity [source: EC:1.18.1.2] | EC no.: 1.18.1.2 |
| Â | GO:0050660 F | FAD binding | Â |
| Â | GO:0050661 F | NADP binding | Â |
| Â | GO:0006118 P | electron transport | Â |
1got | GO:0005834 C | heterotrimeric G-protein complex | PDB Classification: Complex (gtp Binding/transducer) |
| Â | GO:0004871 F | signal transducer activity | PMID: 17036056 |
| Â | GO:0007186 P | G-protein coupled receptor protein signaling pathway | Â |
1k8g | GO:0003677 F | DNA binding | PDB Classification: DNA Binding Protein/dna |
| Â | GO:0042162 F | telomeric DNA binding | PMID: 11743727 |
| Â | GO:0006260 P | DNA replication | Â |
1iis | GO:0042612 C | MHC class I protein complex | PDB Classification: Immune System |
| Â | GO:0030106 F | MHC class I receptor activity | Â |
| Â | GO:0019882 P | antigen processing and presentation | Â |
1lug | GO:0008270 F | zinc ion binding | PDB Classification: Lyase |
| Â | GO:0004089 F | carbonate dehydratase activity [source: EC:4.2.1.1] | EC no.: 4.2.1.1 |
| Â | GO:0006730 P | one-carbon compound metabolic process | Chemical Component: ZINC ION |