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Figure 7 | BMC Bioinformatics

Figure 7

From: Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions

Figure 7

Ratios between true positive (TP) and false positive (FP) rates calculated respectively on the basis of training and background data for SiteGA, PWMs and combined PWM & SiteGA approach. X-axis – TF types and stringencies in terms of fixed TP rate (50, 60 and 70% for SiteGA and PWMs); Y-axis (logarithmic scale) – ratios of frequencies of predictions for the train (TP) to those for background set (FP). Combined approach implied that both PWM and SiteGA models recognized a potential site.

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