Table 2 Data set and results sizes. MCL and MRF consider the same number of proteins: all proteins in the experiments. However, their clustering solutions are different; MCL will produce more singletons than MRF.
From: Identifying protein complexes directly from high-throughput TAP data with Markov random fields
Dataset | Num. Proteins | MCL | MRF | MCODE | Gavin06 (all) | Gavin06 (core) | |
|---|---|---|---|---|---|---|---|
Gavin02 | 1390 | Proteins clustered | 1390 | 1390 | 112 | - | - |
with MIPS | 494 | 494 | 53 | - | - | ||
with Reguly | 136 | 136 | 20 | - | - | ||
Gavin06 | 2760 | Proteins clustered | 2760 | 2760 | 243 | 1488 | 1147 |
with MIPS | 819 | 819 | 141 | 633 | 492 | ||
with Reguly | 520 | 520 | 120 | 429 | 336 |