Table 5 Distribution of cluster sizes for the Gavin06 data.
From: Identifying protein complexes directly from high-throughput TAP data with Markov random fields
MCL | MCL with inter. prob. | MRF | MRF (matrix) | Gavin06 (all) | Gavin06 (core) | MCODE | |
|---|---|---|---|---|---|---|---|
Num. of clusters | 781 | 732 | 698 | 550 | 487 | 477 | 55 |
Num. singletons | 331 | 269 | 4 | 2 | 0 | 55 | 0 |
Size ≥ 2 | 450 | 463 | 694 | 548 | 0 | 422 | 0 |
Mean | 5.39 | 5.38 | 3.97 | 5.03 | 13.46 | 3.33 | 4.42 |
Median | 2 | 3 | 2 | 3 | 9 | 2 | 4 |
1st quantile | 2 | 2 | 2 | 3 | 4 | 2 | 3 |
3rd quantile | 4 | 4 | 4 | 5 | 18 | 4 | 5 |
90% | 8 | 7 | 7 | 8 | 33 | 6 | 7 |
99% | 36 | 29 | 32 | 31 | 66 | 12 | 16 |
Largest cluster | 561 | 607 | 65 | 49 | 96 | 23 | 16 |