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Table 2 List of proteins found. List of proteins found with Sequest and X!Tandem from the PARP-1 immunoprecipitation assay and validated with Scaffold software. Biological sample name refers to the experiment number assigned by the PARPs-DB. This table summarizes the identification from 5 independent immunoprecipitation experiments.

From: PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management system

Biological sample name International Protein Index SwissProt/Uniprot accession no. Protein identification Protein identification probability Gene name
IP111 IPI00375358 P35251 Splice Isoform 1 of Activator 1 140 kDa subunit 99.8% RFC1
IP111 IPI00017412 P35250 Splice Isoform 1 of Activator 1 40 kDa subunit 92.9% RFC2
IP577 IPI00017412 P35250 Splice Isoform 1 of Activator 1 40 kDa subunit 100.0% RFC2
IP597 IPI00017412 P35250 Splice Isoform 1 of Activator 1 40 kDa subunit 100.0% RFC3
IP230 IPI00031521 P40938 Similar to human replication factor C (activator 1) 3, 38 kDa 87.7% RFC3
IP372 IPI00031521 P40938 Similar to human replication factor C (activator 1) 3, 38 kDa 99.8% RFC3
IP577 IPI00031521 P40938 Similar to human replication factor C (activator 1) 3, 38 kDa 100.0% RFC3
IP597 IPI00031521 P40938 Similar to human replication factor C (activator 1) 3, 38 kDa 100.0% RFC3
IP111 IPI00017381 P35249 Activator 1 37 kDa subunit 92.9% RFC4
IP577 IPI00017381 P35249 Activator 1 37 kDa subunit 100.0% RFC4
IP597 IPI00017381 P35249 Activator 1 37 kDa subunit 100.0% RFC4
IP577 IPI00031514 P40937 Activator 1 36 kDa subunit 100.0% RFC5
IP597 IPI00031514 P40937 Activator 1 36 kDa subunit 100.0% RFC5
IP111 IPI00449049 P09874 Poly [ADP-ribose] polymerase 1 100.0% PAPR-1
IP230 IPI00449049 P09874 Poly [ADP-ribose] polymerase 1 100.0% PARP-1
IP372 IPI00449049 P09874 Poly [ADP-ribose] polymerase 1 100.0% PARP-1
IP577 IPI00449049 P09874 Poly [ADP-ribose] polymerase 1 100.0% PARP-1
IP597 IPI00449049 P09874 Poly [ADP-ribose] polymerase 1 100.0% PAPR-1