Skip to main content

Table 2 Estimated values of the four parameters of the three types of spot shapes of Image II *

From: Characterization and simulation of cDNA microarray spots using a novel mathematical model

Spot shape

x 0

K

a

K V

MSD***

doughnut

1

138.07

2.86E-3

-0.89

0.21

3.72E-2

 

2

144.76

1.73E-3

-0.74

0.30

1.08E-2

 

3

198.19

1.68E-3

-0.65

0.48

1.70E-2

 

4

294.20

3.01E-3

-0.26

0.36

2.60E-2

 

5

367.35

3.88E-3

-0.37

1.10

2.77E-2

 

mean

228.51

2.63E-3

-0.58

0.49

2.37E-2

 

SD**

99.63

9.31E-4

0.26

0.35

1.02E-2

volcano

1 †

41.02

1.78E-2

-0.14

1.35

2.43E-2

 

2 †

433.28

6.11E-2

-0.08

1.68

7.35E-3

 

3 †

467.53

2.24E-3

-0.17

2.96

6.77E-3

 

4 ††

60.19

4.40E-3

-0.18

2.60

1.09E-2

 

5 ††

62.10

6.17E-3

-0.01

1.59

1.43E-2

 

mean

212.82

1.83E-2

-0.12

2.04

1.27E-2

 

SD**

217.38

2.46E-2

0.07

0.70

7.14E-3

peak

1

56.92

1.59E-3

0.28

3.51

2.69E-3

 

2

69.96

1.68E-4

0.31

3.02

2.36E-3

 

3

58.17

5.02E-4

0.38

2.44

1.55E-3

 

4

60.20

3.81E-4

0.73

1.75

1.92E-3

 

5

52.05

4.66E-4

0.35

2.39

9.64E-4

 

mean

59.46

6.22E-4

0.41

2.62

1.90E-3

 

SD**

6.59

5.59E-4

0.19

0.67

6.78E-4

  1. * This image was obtained from Stanford MicroArray Database [38]: Experiment ID, 50151; Experiment name, MMAF array batch on PLL QC-2; Category, Quality Control; Subcategory, Array Batch QC; Slide name, mmaf210.
  2. ** Standard deviation.
  3. *** Mean squared deviation, MSD = 1 N ∑ i = 1 N ( y i − x i ) 2 MathType@MTEF@5@5@+=feaagaart1ev2aqatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xI8qiVKYPFjYdHaVhbbf9v8qqaqFr0xc9vqFj0dXdbba91qpepeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGacaGaaiaabeqaaeqabiWaaaGcbaGaeeyta0Kaee4uamLaeeiraqKaeyypa0tcfa4aaSqaaeaacqaIXaqmaeaacqWGobGtaaGcdaaeWaqaamaabmaabaGaemyEaK3aaSbaaSqaaiabdMgaPbqabaGccqGHsislcqWG4baEdaWgaaWcbaGaemyAaKgabeaaaOGaayjkaiaawMcaamaaCaaaleqabaGaeGOmaidaaaqaaiabdMgaPjabg2da9iabigdaXaqaaiabd6eaobqdcqGHris5aaaa@435B@ .
  4. † The spot shape was close to the doughnut-shape.
  5. †† The spot shape was close to the peak-shape.