Table 1 Relative occurrence frequencies of the BSs in the promoter regions of genes grouped according to functional activity
From: Recognition of interferon-inducible sites, promoters, and enhancers
Relative occurrence frequency of a site in a sample | ||||||
|---|---|---|---|---|---|---|
BS (position with respect to the TSS) | training-ISG set | training-ISG set excl.* | control-Gluco set | control-LipM set | control-EPD set | ISGs/EPD ratio |
IRF1 (-200 to -1) | 0.77 | 0.70 | 0.21 | 0.18 | 0.21 | 3.67 |
ISGF3 (-100 to -1) | 0.28 | 0.19 | 0.00 | 0.00 | 0.05 | 5.60 |
ISGF3 (-200 to -1) | 1.00 | 0.85 | 0.08 | 0.17 | 0.10 | 10.00 |
STAT1 (-200 to +1) | 0.19 | 0.15 | 0.05 | 0.00 | 0.08 | 2.38 |
NF-κB (-100 to +100) | 0.93 | 0.80 | 0.46 | 0.46 | 0.12 | 2.02 |