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Table 4 Patterns for method 2, recognition of DNA regions stimulated by the type II IFN (IFNγ)

From: Recognition of interferon-inducible sites, promoters, and enhancers

Site 1 Site 2 W = F1/F2 (weight for the pattern)
strong STAT1 (-)
from -350 to +350
STAT1 (-)
from -350 to +350
20.00
STAT1 (-)
from -350 to +350
- 9.36
STAT1 (-)
from +130 to +350
- 4.22
strong IRF1 (b)
from -350 to +350
IRF1 (b)
from -350 to +350
10.0
IRF1 (-)
from -350 to +350
AP1 (b)
from -500 to +1
5.4
IRF1 (b)
from -650 to +350
GATA1 (b)
from -600 to +1
1.17
IRF1 (b)
from -200 to +50
NF-κB (b)
from -500 to +1
6.0
IRF1 (+)
from -500 to +1
OCT1 (b)
from -500 to +1
2.0
IRF1 (+)
from -350 to +350
TATA (+)
from -100 to +70
5.2
STAT1 (-)
from -350 to +350
strong IRF1 (b)
from -650 to +350
10.0
strong STAT1 (-)
from -350 to +350
STAT1 (-)
from -350 to +350
20.00
STAT1 (-)
from -350 to +350
- 9.36
STAT1 (-)
from +130 to +350
- 4.22
strong IRF1 (b)
from -350 to +350
IRF1 (b)
from -350 to +350
10.00
STAT1 (b)
from -500 to +1
strong IRF1 (b)
from -650 to +350
6.1
STAT1 (b)
from -500 to +1
ISGF3 (b)
from -500 to +1
2.1
STAT1 (+)
from -350 to +350
AP1 (b)
from -500 to +1
3.8
STAT1 (+)
from -300 to +1
OCT1 (b)
from -500 to +1
3.3
STAT1 (b)
from -350 to +350
NF-κB (b)
from -500 to +1
4.1
STAT1 (-)
from -130 to +350
TATA (+)
from -100 to +70
4.0
STAT1 (b)
from -300 to +1
TATA (+)
from -100 to +70
8.0
NF-κB (b)
from -500 to +1
AP1 (b)
from -500 to +1
5.4
  1. *b (both) - any direction of a site; + forward DNA strand; - reverse DNA strand;
  2. ** Location of a site with respect to the TSS