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Table 2 The 41 source organisms used to find orthologous proteins

From: Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices

Escherichia coli K-12 MG1655
Salmonella typhi CT1 8
Samonella enerica
Samonella typhimurium LT2
Yersinia pestis CO92
Yersinia pseudotuberculosis
Shigella flexneri 301 (serotype 2a)
Photorhabdus luminescens
Pasteurella multocida
Mannheimia succiniciproducens
Vibrio cholerae
Vibrio vulnificus YJ016
Vibrio parahaemolyticus
Photobacterium profundum
Pseudomonas aeruginosa
Pseudomonas putida
Pseudomonas syringae pv. Tomato
Acinetobacter sp. ADP1
Shewanella oneidensis
Neisseria meningitides MC58 (serogroup B)
Chromobacterium violaceum
Ralstonia solanacearum
Bordetella pertussis
Bordetella parapertussis
Nitrosomonas europaea
Campylobacter jejuni NCTC11168
Rhodopseudomonas palustris
Bacillus subtilis
Bacillus halodurans
Bacillus anthracis Ames
Bacillus cereus ATCC 14579
Bacillus thuringiensis
Bacillus lucheniformis ATCC 14580
Oceanobacillus iheyensis
Staphylococcus aureus N315 (MRSA)
Staphylococcus epidermidis ATCC12228
Corynebacterium efficiens
Streptomyces avermitilis
Propionibacterium acnes
Rhodopirellula baltica (Pirellula sp.)
Anabaena sp. PCC7120 (Nostoc sp. PCC7120)