Table 1 Similarities Between all SPOUT Structures Detectable With DALI
From: Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases
PDB id | name | organism | specificity | family | 1v2x | 1zjr | 2ha8 | 1gz0 | 1ipa | 1x7o | 1j85 | 1nxz | 1vhk | 1v6z | 1z85 | 1k3r | 1ns5 | 1to0 | 1vh0 | 1o6d | 1oy5 | 1p9p | 1uaj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1v2x | TrmH | T. thermophilus | tRNA:Gm18 | COG0566A | X | 21.4 | 21 | 22.5 | 21.7 | 20.8 | 16.2 | 11.8 | 12.9 | 17.7 | 10.3 | 13.2 | 9.1 | 8.8 | 8.7 | 8.2 | 7.2 | 8.3 | 7.4 |
1zjr | TrmH | A. aeolicus | tRNA:Gm18 | COG0566A | 21.4 | X | 19.3 | 22.3 | 17.7 | 17.6 | 14.5 | 10.7 | 11 | 12.2 | 9.1 | 11.1 | 7.8 | 7.9 | 7.4 | 7.4 | 5.5 | 6.4 | 6.3 |
2ha8 | HTRBP1 | H. sapiens | tRNA:Gm18? | COG0566A | 21 | 19.3 | X | 20.3 | 19.2 | 20.5 | 17.7 | 12.4 | 12.9 | 13 | 10.2 | 10.9 | 8.6 | 9 | 8.5 | 9.1 | 7.8 | 8.9 | 8.9 |
1gz0 | RlmB | E. coli | 23S rRNA:Gm2251 | COG0566B | 22.5 | 22.3 | 20.3 | X | 23.6 | 22.3 | 17.3 | 12.3 | 11.5 | 13.8 | 11.2 | 13.3 | 8.3 | 8.2 | 7.9 | 7.9 | 6.6 | 7.2 | 6.7 |
1ipa | RrmA | T. thermophilus | unknown | COG0566C | 21.7 | 17.7 | 19.2 | 23.6 | X | 20.5 | 17.7 | 12.7 | 12.1 | 13.1 | 11.1 | 13.4 | 9.5 | 9.2 | 9 | 8 | 6.4 | 7.3 | 5.9 |
1x7o | AviRb | S. viridochromogenes | 23S rRNA:Um2479 | COG0566C | 20.8 | 17.6 | 20.5 | 22.3 | 20.5 | X | 17.9 | 11.7 | 12.4 | 13.4 | 10.2 | 12.1 | 8.2 | 8.4 | 7.8 | 7.8 | 6.5 | 7.9 | 7.8 |
1j85 | YibK | H. influenzae | unknown | COG0219 | 16.2 | 14.5 | 17.7 | 17.3 | 17.7 | 17.9 | X | 10.8 | 12.3 | 13 | 10.3 | 11.7 | 7.1 | 7.9 | 7.1 | 8.5 | 5.9 | 6.8 | 6.9 |
1nxz | RsmE | H. influenzae | 16S rRNA:m3U1498? | COG1385 | 11.8 | 10.7 | 12.4 | 12.3 | 12.7 | 11.7 | 10.8 | X | 22.8 | 21 | 19.4 | 13.9 | 9.3 | 8.3 | 8.5 | 9.7 | 6.2 | 7.3 | 7.1 |
1vhk | YqeU | B. subtilis | 16S rRNA:m3U1498? | COG1385 | 12.9 | 11 | 12.9 | 11.5 | 12.1 | 12.4 | 12.3 | 22.8 | X | 23 | 17.5 | 12.8 | 9 | 8.9 | 8.1 | 8.7 | 6.4 | 7.7 | 7.4 |
1v6z | TT1573 | T. thermophilus | 16S rRNA:m3U1498? | COG1385 | 13.8 | 12.2 | 13 | 13.8 | 13.1 | 13.4 | 13 | 21 | 23 | X | 14.3 | 13.8 | 8.3 | 8.4 | 7.3 | 7.7 | 5.8 | 7 | 6.8 |
1z85 | TM1380 | T. maritima | 16S rRNA:m3U1498? | COG1385 | 10.3 | 9.1 | 10.2 | 11.2 | 11.1 | 10.2 | 10.3 | 19.4 | 17.5 | 14.3 | X | 11.2 | 5.2 | 5.9 | 5 | 5.9 | 5.9 | 5.9 | 4.9 |
1k3r | MT1 | M. thermoautotrophicum | unknown | COG2106 | 13.2 | 11.1 | 10.9 | 13.3 | 13.4 | 12.1 | 11.5 | 13.9 | 12.8 | 13.8 | 11.2 | X | 10.6 | 10.2 | 8.5 | 9.7 | 7.4 | 7.9 | 7.7 |
1ns5 | YbeA | E. coli | unknown | COG1576 | 9.1 | 7.8 | 8.6 | 8.3 | 9.5 | 8.2 | 8.3 | 9.3 | 9 | 8.3 | 5.2 | 10.6 | X | 23.8 | 21.9 | 22.7 | 9.6 | 11.1 | 10.1 |
1to0 | sr145 | B. subtilis | unknown | COG1576 | 8.8 | 7.9 | 9 | 8.2 | 9.2 | 8.4 | 7.9 | 8.3 | 8.9 | 8.4 | 5.9 | 10.2 | 23.8 | X | 26.4 | 22.4 | 10.2 | 11 | 10.8 |
1vh0 | SAV0024 | S. aureus | unknown | COG1576 | 8.7 | 7.4 | 8.5 | 7.9 | 9 | 7.8 | 7.1 | 8.5 | 8.1 | 7.3 | 5 | 8.5 | 21.9 | 26.4 | X | 22.8 | 10.5 | 11.2 | 9.6 |
1o6d | TM0844 | T. maritima | unknown | COG1576 | 8.2 | 7.4 | 9.1 | 7.9 | 8 | 7.8 | 8.5 | 9.7 | 8.7 | 7.7 | 5.9 | 9.7 | 22.7 | 22.4 | 22.8 | X | 10.3 | 11.6 | 11.9 |
1oy5 | TrmD | A. aeolicus | tRNA:m1G37 | COG0336 | 7.2 | 5.5 | 7.8 | 6.6 | 6.4 | 6.5 | 5.9 | 6.2 | 6.4 | 5.8 | 5.9 | 7.4 | 9.6 | 10.2 | 10.5 | 10.3 | X | 21.1 | 20.6 |
1p9p | TrmD | E. coli | tRNA:m1G37 | COG0336 | 8.3 | 6.4 | 8.9 | 7.2 | 7.3 | 7.9 | 6.8 | 7.3 | 7.7 | 7 | 5.9 | 7.9 | 11.1 | 11 | 11.2 | 11.6 | 21.1 | X | 29.1 |
1uaj | TrmD | H. influenzae | tRNA:m1G37 | COG0336 | 7.4 | 6.3 | 8.9 | 6.7 | 5.9 | 7.8 | 6.9 | 7.1 | 7.4 | 6.8 | 4.9 | 7.7 | 10.1 | 10.8 | 9.6 | 11.9 | 20.6 | 29.1 | X |