Table 1 10 difficult pairs of proteins as mentioned in [7]
From: Comparison of protein structures by growing neighborhood alignments
PDBid1(size) – PDBid2(size) | Seq Nbhd LAli/RMSD | Struct Nbhd LAli/RMSD | DALI LAli/RMSD | CE Lali/RMSD | SSM LAli/RMSD |
|---|---|---|---|---|---|
1fxiA(96) – 1ubq(76) | 54/2.18 | 56/2.16 | 60/2.6 | 100/3.82 | 60/2.86 |
1ten(90) – 3hhrB(185) | 84/1.58 | 82/1.39 | 86/1.9 | 87/1.90 | 73/2.09 |
3hlaB(270) – 2rhe(114) | 70/2.26 | 68/2.26 | 75/3 | 85/3.46 | 78/3.08 |
2azaA(129) – 1paz(120) | 72/2.46 | 79/2.20 | 81/2.5 | 85/2.90 | 79/2.41 |
1cewI(108) – 1molA(94) | 68/1.80 | 79/1.94 | 81/2.3 | 81/2.34 | 79/2.12 |
1cid(177) – 2rhe(114) | 91/2.05 | 91/2.06 | 97/3.2 | 98/2.97 | 89/2.32 |
1crl(534) – 1ede(310) | 160/2.50 | 174/2.49 | 211/3.5 | 220/3.91 | 188/3.81 |
2sim(381) – 1nsbA(390) | 262/2.72 | 262/2.63 | 222/3.8 | 276/2.99 | 271/2.86 |
1bgeB(159) – 2gmfA(121) | 85/2.48 | 87/2.22 | 94/3.3 | 102/4.02 | 44/2.49 |
1tie(166) – 4fgf(124) | 105/2.20 | 106/2.27 | 114/3.1 | 115/2.86 | 114/2.85 |