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Table 2 Comparison of results obtained from the 2 algorithms described here with DALI

From: Comparison of protein structures by growing neighborhood alignments

Data set/classifn.

Align. sequence nbhd.

Better/Worse/Level

Align. structure nbhd.

Better/Worse/Level

Fischer's

4/4/60

5/2/61

Novotny's

  

1.10.164

1/0/9

2/0/8

1.10.40

11/0/10

5/0/16

1.25.30

10/0/11

5/0/16

2.30.110

0/0/6

0/0/6

2.40.100

0/0/28

0/0/28

2.100.10

5/3/7

5/0/10

3.10.70

0/0/10

0/0/10

3.40.91

0/0/6

0/0/6

3.70.10

0/0/15

2/0/13

2.40.20

0/3/18

0/0/21