Table 6 Comparison of pairs of proteins with internal repeats
From: Comparison of protein structures by growing neighborhood alignments
PDBid1 – PDBid2 | Seq Nbhd LAli/RMSD | Struct Nbhd LAli/RMSD | DALI LAli/RMSD | CE LAli/RMSD | SSM LAli/RMSD |
|---|---|---|---|---|---|
1gyhA(318) – 1tl2A(235) | 155/3.00 | 143/2.90 | 196/3.6 | 149/3.9 | 192/3.99 |
1nscA(390) – 3sil(383) | 258/2.62 | 257/2.67 | 289/3.2 | 272/2.9 | 272/2.92 |
1bd8(156) – 1ihbA(156) | 152/1.18 | 153/1.22 | 154/1.3 | 154/1.3 | 152/1.24 |
1l4aA(66) – 1n7sA(63) | 59/0.96 | 59/0.90 | 62/1.7 | 59/0.9 | -/- |
2pec(352) – 1bn8A(399) | 269/1.62 | 268/1.64 | 287/2.5 | 291/2.7 | 258/1.59 |
1kapP(470) – 1sat(468) | 436/1.25 | 438/1.24 | 448/1.7 | 446/1.5 | 427/1.16 |