Table 7 Detection of folds using sequence neighborhood alignment method
From: Comparison of protein structures by growing neighborhood alignments
SCOPid (tot. num.) | Method | cutoff (%/Z) | True +ve | False +ve |
|---|---|---|---|---|
d101m__(37) | seq nbhd | 50% | 34 | 9 |
| Â | seq nbhd | 45% | 35 | 38 |
| Â | CE | 4.0 | 35 | 95 |
d1htia_(253) | seq nbhd | 50% | 190 | 4 |
| Â | seq nbhd | 45% | 231 | 13 |
| Â | CE | 4.0 | 233 | 224 |
d1jzba_(119) | seq nbhd | 50% | 28 | 56 |
| Â | seq nbhd | 45% | 48 | 172 |
| Â | CE | 4.0 | 2 | 0 |
d2pela_ (48) | seq nbhd | 50% | 41 | 9 |
| Â | seq nbhd | 45% | 45 | 21 |
| Â | CE | 4.0 | 36 | 8 |
d7rsa__(4) | seq nbhd | 50% | 4 | 0 |
| Â | seq nbhd | 45% | 4 | 13 |
| Â | CE | 4.0 | 4 | 0 |