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Table 1 Abundant LongSAGE tags observed in pancreatic acinar cells.

From: Discarding duplicate ditags in LongSAGE analysis may introduce significant error

 

Duplicate ditags

   
 

Includeda

Removedb

   

Tag sequence

Tag count

Tag count

Fold changec

THCd

Gene name

CATGTCAGGGTGATTCTGGTG

3315

1086

0.33

2531342

Trypsin I

CATGGCGTGACCAGCTTTGTT

2609

1161

0.44

2498325

Elastase IIIB

CATGAATTGAAGAAACTGACC

2359

713

0.30

2510696

Unknown

CATGGAGCACACCCTGAATCA

1145

657

0.57

2613307

Carboxypeptidase A1

CATGGAACACAAAAAAAAAAA

1094

535

0.49

 

Unknown

CATGTGCGAGACCACCCCTAT

891

461

0.52

2683646

Carboxypeptidase A2

CATGTCCTCAAAACAAAAAAA

753

377

0.50

 

Unknown

CATGAGCCTTGGTATCAAGAG

645

353

0.55

2462969

Cholesterol esterase

CATGTTCATACACCTATCCCC

531

177

0.33

2398611

NADH dehydrogenase

CATGCTGAATCTAAATTATAA

526

257

0.49

2590573

Alpha-amylase 2B

CATGTCCTCAAAACAATAAAA

465

252

0.54

 

Unknown

CATGTCCTCAAAAAAAAAAAA

431

211

0.49

 

Unknown

  1. aTotal number of tags = 44,276
  2. bTotal number of tags = 31,868
  3. ctag count including duplicate ditags/tag count excluding duplicate ditags.
  4. d Tentative Human Contig number from The Institute for Genomic Research