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Figure 4 | BMC Bioinformatics

Figure 4

From: MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes

Figure 4

Sequence logos of TIS-upstream-regions for MED, Glimmer, GeneMarkS and ZCURVE prediction to S. solfataricus. The three Venn diagrams indicate the number of common and different gene starts by MED 2.0 versus Glimmer 3.02 (a), GeneMarkS (b) and ZCURVE 1.0 (c), separately. The left side sequence logos are for upstream regions to the TISs predicted by MED2.0 but rejected by Glimmer 3.02 (d), GeneMarkS (f) and ZCURVE 1.0 (h). The right side sequence logos of are for upstream regions to the TISs predicted by Glimmer 3.02 (e), GeneMarkS (g) and ZCURVE 1.0 (i) but rejected by MED2.0. The logos of start codon at position 0 to +2 are masked off.

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