Table 1 Searching pattern with mismatches. Example of patterns with up to three mismatches for the input peptide AYKTK
From: The MEPS server for identifying protein conformational epitopes
mismatches | 1 | 2 | 3 |
|---|---|---|---|
Patterns | *YKTK | **KTK | ***TK |
A*KTK | *Y*TK | **K*K | |
AY*TK | *YK*K | **KT* | |
AYK*K | *YKT* | *Y**K | |
AYKT* | A**TK | *Y*T* | |
A*K*K | *YK** | ||
A*KT* | A***K | ||
AY**K | A**T* | ||
AY*T* | A*K** | ||
AYK** | AY*** |