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Table 1 Searching pattern with mismatches. Example of patterns with up to three mismatches for the input peptide AYKTK

From: The MEPS server for identifying protein conformational epitopes

mismatches 1 2 3
Patterns *YKTK **KTK ***TK
  A*KTK *Y*TK **K*K
  AY*TK *YK*K **KT*
  AYK*K *YKT* *Y**K
  AYKT* A**TK *Y*T*
   A*K*K *YK**
   A*KT* A***K
   AY**K A**T*
   AY*T* A*K**
   AYK** AY***