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Figure 1 | BMC Bioinformatics

Figure 1

From: Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome

Figure 1

Representation of the possible instances resulting from pairwise comparisons of c-HSPs and e-HSPs: i) exact match: the start and end positions of the e-HSP coincide with those of the c-HSP; ii) partial match: the e-HSP and c-HSP share one of the edges and the other edge of the e-HSP is included in the c-HSP region; iii) internal match: an e-HSP lies within a c-HSP. Internal matches can be distinguished in two cases: a) unchained e-HSP: in case the e-HSP is completely included in the corresponding c-HSP or b) chained e-HSP: in case the e-HSP is concatenated to surrounding e-HSPs; iv) undefined edges: an e-HSP is overlapping a terminal c-HSP beyond one of the contig boundaries; v) e-HSP overlapping introns: if one or both the edges of an e-HSP lie on an intronic region of the contig.

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