Table 2 Characteristics of the genome-wide data sets containing true and decoy acceptor and donor splice sites for our five model organisms.
From: Accurate splice site prediction using support vector machines
Worm | Fly | Cress | Fish | Human | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Acceptor | Donor | Acceptor | Donor | Acceptor | Donor | Acceptor | Donor | Acceptor | Donor | |
Training total | 1,105,886 | 1,744,733 | 1,289,427 | 2,484,854 | 1,340,260 | 2,033,863 | 3,541,087 | 6,017,854 | 6,635,123 | 9,262,241 |
Fraction positives | 3.6% | 2.3% | 1.4% | 0.7% | 3.6% | 2.3% | 2.4% | 1.5% | 1.5% | 1.1% |
Evaluation total | 371,897 | 588,088 | 425,287 | 820,172 | 448,924 | 680,998 | 3,892,454 | 10,820,985 | 10,820,985 | 15,201,348 |
Fraction positives | 3.6% | 2.3% | 1.4% | 0.7% | 3.6% | 2.3% | 0.7% | 0.4% | 0.3% | 0.2% |
Testing total | 364,967 | 578621 | 441,686 | 851,539 | 445,585 | 673,732 | 3,998,521 | 11,011,875 | 11,011,875 | 15,369,748 |
Fraction positives | 3.6% | 2.3% | 1.4% | 0.7% | 3.5% | 2.3% | 0.7% | 0.4% | 0.3% | 0.2% |