Table 4 Performance evaluation on the genome-wide data sets for worm, fly cress, fish, and human.
From: Accurate splice site prediction using support vector machines
Worm | Fly | Cress | Fish | Human | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Acc | Don | Acc | Don | Acc | Don | Acc | Don | Acc | Don | |
MC | ||||||||||
auROC(%) | 99.62 ± 0.03 | 99.55 ± 0.02 | 98.78 ± 0.10 | 99.12 ± 0.05 | 99.12 ± 0.03 | 99.44 ± 0.02 | 98.98 ± 0.03 | 99.19 ± 0.05 | 96.03 ± 0.09 | 97.78 ± 0.05 |
auPRC(%) | 92.09 ± 0.28 | 89.98 ± 0.20 | 80.27 ± 0.76 | 78.47 ± 0.63 | 87.43 ± 0.28 | 88.23 ± 0.34 | 63.59 ± 0.72 | 62.91 ± 0.57 | 16.20 ± 0.22 | 24.98 ± 0.30 |
WD | ||||||||||
auROC(%) | 99.77 ± 0.02 | 99.82 ± 0.01 | 99.02 ± 0.09 | 99.49 ± 0.05 | 99.37 ± 0.02 | 99.66 ± 0.02 | 99.36 ± 0.04 | 99.60 ± 0.04 | 97.76 ± 0.06 | 98.59 ± 0.05 |
auPRC(%) | 95.20 ± 0.29 | 95.34 ± 0.10 | 84.80 ± 0.35 | 86.42 ± 0.60 | 91.06 ± 0.15 | 92.21 ± 0.17 | 85.33 ± 0.38 | 85.80 ± 0.46 | 52.07 ± 0.33 | 54.62 ± 0.54 |
WDS | ||||||||||
auROC(%) | 99.80 ± 0.02 | 99.82 ± 0.01 | 99.12 ± 0.09 | 99.51 ± 0.05 | 99.43 ± 0.02 | 99.68 ± 0.02 | 99.38 ± 0.04 | 99.61 ± 0.04 | 97.86 ± 0.05 | 98.63 ± 0.05 |
auPRC(%) | 95.89 ± 0.26 | 95.34 ± 0.10 | 86.67 ± 0.35 | 87.47 ± 0.54 | 92.16 ± 0.17 | 92.88 ± 0.15 | 86.58 ± 0.33 | 86.94 ± 0.44 | 54.42 ± 0.38 | 56.54 ± 0.57 |