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Table 2 Average error for reconstructing masked genotypes on Yoruba-100.

From: Constrained hidden Markov models for population-based haplotyping

Method

10%

20%

30%

40%

fastPHASE

0.045

0.052

0.062

0.075

SpaMM

0.058

0.066

0.078

0.096

fastPHASE-NA

0.067

0.075

0.089

0.126

HIT

0.070

0.079

0.087

0.098

GERBIL

0.073

0.091

0.110

0.136

  1. From 10% to 40% of all genotypes were masked randomly. Results are averaged over 100 datasets.
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BMC Bioinformatics

ISSN: 1471-2105

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