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Table 3 Average error for reconstructing masked genotypes on Hudson.

From: Constrained hidden Markov models for population-based haplotyping

Method

10%

20%

30%

40%

fastPHASE

0.035

0.041

0.051

0.063

SpaMM

0.017

0.023

0.034

0.052

fastPHASE-NA

0.056

0.062

0.074

0.087

HIT

0.081

0.093

0.108

0.127

GERBIL

0.102

0.122

0.148

0.169

  1. From 10% to 40% of all genotypes were masked randomly. Results are averaged over 50 datasets.
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BMC Bioinformatics

ISSN: 1471-2105

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