Table 1 Description of the 44 FEATURE properties
From: Clustering protein environments for function prediction: finding PROSITE motifs in 3D
Dimension | Description | Dimension | Description |
|---|---|---|---|
1 | Aliphatic carbon | 23 | Residue name is ALA |
2 | Aromatic carbon | 24 | Residue name is ARG |
3 | Carbon with partial positive charge | 25 | Residue name is ASN |
4 | Aliphatic carbon next to a polar atom | 26 | Residue name is ASP |
5 | Amide carbon | 27 | Residue name is CYS |
6 | Carboxyl carbon | 28 | Residue name is GLN |
7 | Amide nitrogen | 29 | Residue name is GLU |
8 | Positively charged nitrogen | 30 | Residue name is GLY |
9 | Aromatic nitrogen | 31 | Residue name is HIS |
10 | Amide oxygen | 32 | Residue name is ILE |
11 | Carboxyl oxygen | 33 | Residue name is LEU |
12 | Hydroxyl oxygen | 34 | Residue name is LYS |
13 | Sulfur | 35 | Residue name is MET |
14 | Partial charge | 36 | Residue name is PHE |
15 | Van der Waals volume | 37 | Residue name is PRO |
16 | Charge | 38 | Residue name is SER |
17 | Negative charge | 39 | Residue name is THR |
18 | Positive charge | 40 | Residue name is TRP |
19 | Charge on histidines | 41 | Residue name is TYR |
20 | Hydrophobicity | 42 | Residue name is VAL |
21 | Solvent accessibility | 43 | Residue name is HOH |
22 | Number of atoms | 44 | Residue name is other |