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Table 2 AnnoLite comparison against BLAST-based searches.

From: The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

 

AnnoLite

F-BLAST

T-BLAST

 

AUC

COV

AUC

COV

AUC

COV

SCOP Fold

0.85

93.6

0.79

90.8

0.62

89.5

CATH Fold

0.82

91.2

0.81

87.7

0.57

86.6

InterPro Entry

0.80

86.8

0.71

79.8

0.65

77.8

PFAM Family

0.83

91.1

0.76

86.4

0.62

82.8

EC Number

0.75

87.9

0.77

83.0

0.71

82.5

GO Molecular Function

0.68

86.0

0.60

78.8

0.65

76.9

GO Biological Process

0.80

88.3

0.72

82.4

0.63

80.1

GO Cellular Component

0.69

93.2

0.63

90.0

0.61

86.9

  1. AUC: area under the curve; COV: coverage (%).