Skip to main content

Advertisement

Table 2 AnnoLite comparison against BLAST-based searches.

From: The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

  AnnoLite F-BLAST T-BLAST
  AUC COV AUC COV AUC COV
SCOP Fold 0.85 93.6 0.79 90.8 0.62 89.5
CATH Fold 0.82 91.2 0.81 87.7 0.57 86.6
InterPro Entry 0.80 86.8 0.71 79.8 0.65 77.8
PFAM Family 0.83 91.1 0.76 86.4 0.62 82.8
EC Number 0.75 87.9 0.77 83.0 0.71 82.5
GO Molecular Function 0.68 86.0 0.60 78.8 0.65 76.9
GO Biological Process 0.80 88.3 0.72 82.4 0.63 80.1
GO Cellular Component 0.69 93.2 0.63 90.0 0.61 86.9
  1. AUC: area under the curve; COV: coverage (%).