Table 4 Accuracy of AnnoLyze in locating binding sites for small ligands.
From: The AnnoLite and AnnoLyze programs for comparative annotation of protein structures
Ligand | Extended name | Cases | Coverage (%) | Average (%) | Correct (%) | Patcher (%) |
|---|---|---|---|---|---|---|
ADP | ADENOSINE-5'-DISPHOSPATE | 172 | 80.2 | 93.2 | 100.0 | 45.6 |
AMP | ADENOSINE-5'-MONOPHOSPHATE | 56 | 80.4 | 91.4 | 100.0 | 31.0 |
ANP | PHOSPHOAMINOPHOSPHONIC ACID – ADENYLATE ESTER | 74 | 68.9 | 91.0 | 100.0 | 51.3 |
ATP | ADENOSINE-5'-TRIPHOSPHATE | 107 | 72.9 | 92.7 | 97.4 | 57.7 |
BOG | B-OCTYLGLUCOSIDE | 31 | 54.8 | 71.9 | 76.5 | 18.2 |
CIT | CITRIC ACID | 52 | 61.5 | 82.2 | 90.6 | 33.3 |
FAD | FLAVIN-ADENINE DINUCLEOTIDE | 110 | 91.8 | 96.1 | 100.0 | 60.9 |
FMN | FLAVIN MONONUCLEOTIDE | 62 | 85.5 | 94.5 | 100.0 | 60.0 |
FUC | FUCOSE | 35 | 82.9 | 67.9 | 72.4 | 0.0 |
GAL | D-GALACTOSE | 70 | 80.0 | 84.5 | 92.9 | 41.7 |
GDP | GUANOSINE-5'-DIPHOSPHATE | 72 | 95.8 | 93.2 | 97.1 | 33.3 |
GLC | GLUCOSE | 115 | 80.0 | 84.1 | 93.5 | 35.3 |
HEC | HEMEC | 42 | 95.2 | 96.9 | 100.0 | 55.6 |
HEM | PROTOPRPHYRIN IX CONTAINING FE | 360 | 94.7 | 97.1 | 99.7 | 73.4 |
MAN | ALPHA D-MANNOSE | 52 | 86.5 | 84.6 | 95.6 | 15.4 |
MES | ETHANESULFONIC ACID | 53 | 43.4 | 78.2 | 82.6 | 29.4 |
NAD | NICOTAMINE ADENINE DINUCLEOTIDE | 183 | 85.8 | 95.9 | 100.0 | 55.6 |
NAG | N-ACETYL-D-GLUCOSAMINE | 153 | 86.9 | 84.8 | 94.7 | 4.6 |
NAP | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 73 | 84.9 | 93.6 | 98.4 | 65.4 |
NDP | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 64 | 85.9 | 94.9 | 100.0 | 58.3 |
Average | 97 | 79.9 | 88.4 | 94.6 | 41.3 |