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Table 6 Filtering cutoffs for removing redundancy in the testing sets.

From: The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

  Initial set Sequence Identity (%) Equivalent positions (%) RMSD (Å) Difference in length Final set
Annotation 10,997 N/A ≥60.0 ≤2.0 ≤30 1,879
Ligand 30,126 ≥30.0 ≥75.0 ≤4.0 ≤50 4,948
Partner 30,425 ≥30.0 ≥75.0 ≤4.0 ≤50 4,613
Localize 30,126 ≥90.0 ≥90.0 ≤2.0 N/A 1,936
  1. Sequence identity is the percentage of identical residues with respect to the aligned positions in the structural alignment. Equivalent position is the percentage of residues that align within 4 Å with respect to the shorter of the two aligned structures. The RMSD is calculated using Cα atoms of the two aligned structures.