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Table 1 Matches for ATP- and ADP-binding descriptors with various E-value thresholds.

From: Using structural motif descriptors for sequence-based binding site prediction

Hits Precision Recall Threshold TP FP New
2873 96.59 7.55 1.00E-10 2775 98 771
3113 96.5 8.17 1.00E-09 3004 109 814
3459 96.18 9.05 1.00E-08 3327 132 854
3943 96.25 10.32 1.00E-07 3795 148 899
4488 95.9 11.7 1.00E-06 4304 184 929
5114 93.86 13.05 1.00E-05 4800 314 955
5773 92.74 14.56 0.0001 5354 419 982
6477 91.71 16.15 0.001 5940 537 1012
7477 91.53 18.61 0.01 6844 633 1053
8749 91.45 21.76 0.1 8001 748 1115
10349 89.43 25.17 1 9255 1094 1249
14165 78.86 30.38 10 11171 2994 1499
27926 53.67 40.76 100 14988 12938 2440
93261 25.85 65.56 1000 24109 69152 6397
  1. A benchmark set containing 205.000 known ATP-binding or not ATP-binding SwissProt entries was used to measure the precision and recall of 306 ADP/ATP binding descriptors. Hits were counted at various E-value cutoffs. Number of True Positives (TP), False Positives (FP) and number of those True Positives not found automatically by any Prosite-pattern (New) were determined.