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Table 4 Sets of features that are emitted by transitions in the FSM.

From: Learning biophysically-motivated parameters for alpha helix prediction

Sets of features emitted by FSM transition
Label Features Description
#0 0 Coil defined as zero-energy
#1 i = 3 + 3 C R n + i 1 i 1 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaadaaeWaqaaiabdoeadnaaDaaaleaacqWGsbGudaWgaaadbaGaemOBa4Maey4kaSIaemyAaKMaeyOeI0IaeGymaedabeaaaSqaaiabdMgaPjabgkHiTiabigdaXaaaaeaacqWGPbqAcqGH9aqpcqGHsislcqaIZaWmaeaacqGHRaWkcqaIZaWma0GaeyyeIuoaaaa@4013@ End of helix processing (C-cap)
#2 H R n + i = 3 + 3 N R n + i 1 i 1 MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGibasdaWgaaWcbaGaemOuai1aaSbaaWqaaiabd6gaUbqabaaaleqaaOGaey4kaSYaaabmaeaacqWGobGtdaqhaaWcbaGaemOuai1aaSbaaWqaaiabd6gaUjabgUcaRiabdMgaPjabgkHiTiabigdaXaqabaaaleaacqWGPbqAcqGHsislcqaIXaqmaaaabaGaemyAaKMaeyypa0JaeyOeI0IaeG4mamdabaGaey4kaSIaeG4mamdaniabggHiLdaaaa@4524@ Start of helix processing (N-cap)
#3 H R n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGibasdaWgaaWcbaGaemOuai1aaSbaaWqaaiabd6gaUbqabaaaleqaaaaa@30BB@ Normal helix residue
#4 H R n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGibasdaWgaaWcbaGaemOuai1aaSbaaWqaaiabd6gaUbqabaaaleqaaaaa@30BB@ + A Helix after very short coil
#5 H R n MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGibasdaWgaaWcbaGaemOuai1aaSbaaWqaaiabd6gaUbqabaaaleqaaaaa@30BB@ + B Helix after short coil
  1. R i denotes the residue at position i in the protein, and n is the current position of the FSM.