Skip to main content

Table 1 List of genes reported as worst fitted in [6] and their prediction results from the SDE beta sigmoid model

From: A stochastic differential equation model for transcriptional regulatory networks

Target

logL

AIC

QE

Best Fit

YBR089W(NA)

-3.13

10.27

16.56

YBR089W = -0.180 + 0.481 BAS1

YDR285W(ZIP1)*

1.25

5.48

2.17

YDR285W = 0.253 + -0.258 GAT1 + -0.511 GCN4 + -0.202 FKH1

YFR057W(NA)*

2.33

1.32

2.40

YFR057W = -0.057 + 0.405 GAL80 + -0.09129 IFH1

YAL018C(NA)*

5.29

-0.58

1.25

YAL018C = 0.256 + -1.985 GAL80 + -0.922 FKH2 + 1.983 IME1 + 0.624 HMS1

YOR264W(DSE3)*

4.65

-3.31

2.77

YOR264W = -0.265 + 0.205 CHA4 + 0.684 IME1

YOL116W(MSN1)*

3.29

-0.58

3.58

YOL116W = -0.045 + 0.229 HAL9 + -0.132 FZF1

YGR269W(NA)**

12.41

-14.83

0.48

YGR269W = 0.011 + -0.263 GZF3 + 0.313 CRZ1 + -0.383 DAL80 + 0.361 AZF1

YOR383C(FIT3)**

10.07

-9.73

0.81

YOR383C = 0.073 + -0.199 ARG81+ 0.325 GLN3 + -0.218IFH1

YOR319W(HSH49)**

11.52

-11.05

0.60

YOR319W = -0.033 + 0.337 CST6 + -0.170 CIN5 + 0.719 GAL80 + -0.191 IFH1 + -0.274 ACA1

YKL001C(MET14)*

2.26

-0.52

2.16

YKL001C = 0.05 + -0.141 MAC1

YDL117W(CYK3)*

8.73

-7.47

1.21

YDL117W = -0.463 + 0.577 AFT2 + 0.703 FKH2 + 0.177 HAP5 + 0.132 FAP7

YKL185W(ASH1)**

10.01

-10.02

0.52

YKL185W = 0.176 + -0.485 ASK10 + -0.241 DOT6 + 0.211 FAP7 + 0.163 HAP5

YBR158W(AMN1)

-0.53

9.06

6.40

YBR158W = 0.066 + -0.191 IFH1 + 0.392 CHA4 + -0.313 ABF1

YBR108W(NA)*

9.23

-8.47

0.98

YBR108W = 0.082 + 0.723 HMS1 + -1.512 GAL80 + 1.58 IME1 + -0.639 FKH2

YAL020C(ATS1)**

9.84

-11.69

0.61

YAL020C = 0.011 + -0.267 HAC1 + 0.534 GAL4 + -0.521 INO4

YBR002C(RER2)

3.41

-0.83

3.46

YBR002C = -0.020 + 0.239 FKH1 + -0.229 ABF1

YCL040W(GLK1)*

6.78

-7.56

3.13

YCL040W = -0.118 + 0.261 CST6 + 0.300 HMS1

YNL018C(NA)*

5.15

-4.31

1.43

YNL018C = 0.028 + -0.259 KRE33 + 0.182 CAD1

YNL192W(CHS1)

1.64

2.71

3.45

YNL192W = -0.081 + 0.307 CHA4 + -0.182 ARG81

YBR230C(NA)

0.74

6.51

2.20

YBR230C = -0.025 + 0.625 MAC1 + -0.694 HAP2 + 0.462 HOG1

  1. Fitting parameters obtained with the beta sigmoid model for the set of the 20 worst fitted genes with the sigmoid regulatory model; the asterisk * marks an improvement of the fitting with respect to the results from Table 2. The prediction of five genes (YGR269W, FIT3, HSH49, ASH1 and ATS1) shows a significant improvement.