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Table 1 List of genes reported as worst fitted in [6] and their prediction results from the SDE beta sigmoid model

From: A stochastic differential equation model for transcriptional regulatory networks

Target logL AIC QE Best Fit
YBR089W(NA) -3.13 10.27 16.56 YBR089W = -0.180 + 0.481 BAS1
YDR285W(ZIP1)* 1.25 5.48 2.17 YDR285W = 0.253 + -0.258 GAT1 + -0.511 GCN4 + -0.202 FKH1
YFR057W(NA)* 2.33 1.32 2.40 YFR057W = -0.057 + 0.405 GAL80 + -0.09129 IFH1
YAL018C(NA)* 5.29 -0.58 1.25 YAL018C = 0.256 + -1.985 GAL80 + -0.922 FKH2 + 1.983 IME1 + 0.624 HMS1
YOR264W(DSE3)* 4.65 -3.31 2.77 YOR264W = -0.265 + 0.205 CHA4 + 0.684 IME1
YOL116W(MSN1)* 3.29 -0.58 3.58 YOL116W = -0.045 + 0.229 HAL9 + -0.132 FZF1
YGR269W(NA)** 12.41 -14.83 0.48 YGR269W = 0.011 + -0.263 GZF3 + 0.313 CRZ1 + -0.383 DAL80 + 0.361 AZF1
YOR383C(FIT3)** 10.07 -9.73 0.81 YOR383C = 0.073 + -0.199 ARG81+ 0.325 GLN3 + -0.218IFH1
YOR319W(HSH49)** 11.52 -11.05 0.60 YOR319W = -0.033 + 0.337 CST6 + -0.170 CIN5 + 0.719 GAL80 + -0.191 IFH1 + -0.274 ACA1
YKL001C(MET14)* 2.26 -0.52 2.16 YKL001C = 0.05 + -0.141 MAC1
YDL117W(CYK3)* 8.73 -7.47 1.21 YDL117W = -0.463 + 0.577 AFT2 + 0.703 FKH2 + 0.177 HAP5 + 0.132 FAP7
YKL185W(ASH1)** 10.01 -10.02 0.52 YKL185W = 0.176 + -0.485 ASK10 + -0.241 DOT6 + 0.211 FAP7 + 0.163 HAP5
YBR158W(AMN1) -0.53 9.06 6.40 YBR158W = 0.066 + -0.191 IFH1 + 0.392 CHA4 + -0.313 ABF1
YBR108W(NA)* 9.23 -8.47 0.98 YBR108W = 0.082 + 0.723 HMS1 + -1.512 GAL80 + 1.58 IME1 + -0.639 FKH2
YAL020C(ATS1)** 9.84 -11.69 0.61 YAL020C = 0.011 + -0.267 HAC1 + 0.534 GAL4 + -0.521 INO4
YBR002C(RER2) 3.41 -0.83 3.46 YBR002C = -0.020 + 0.239 FKH1 + -0.229 ABF1
YCL040W(GLK1)* 6.78 -7.56 3.13 YCL040W = -0.118 + 0.261 CST6 + 0.300 HMS1
YNL018C(NA)* 5.15 -4.31 1.43 YNL018C = 0.028 + -0.259 KRE33 + 0.182 CAD1
YNL192W(CHS1) 1.64 2.71 3.45 YNL192W = -0.081 + 0.307 CHA4 + -0.182 ARG81
YBR230C(NA) 0.74 6.51 2.20 YBR230C = -0.025 + 0.625 MAC1 + -0.694 HAP2 + 0.462 HOG1
  1. Fitting parameters obtained with the beta sigmoid model for the set of the 20 worst fitted genes with the sigmoid regulatory model; the asterisk * marks an improvement of the fitting with respect to the results from Table 2. The prediction of five genes (YGR269W, FIT3, HSH49, ASH1 and ATS1) shows a significant improvement.