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Table 2 L/10 best scores accuracy improvements of GARP contact prediction for P2PconPred on the test set using parameters: 5% top scores a, W = 2, Geometric unweighted mutual coefficient.

From: Refining intra-protein contact prediction by graph analysis

 

Without GARP procedure

With GARP procedure

 

Accuracy protein

Accuracy core

Accuracy protein

Accuracy core

P2PConPred

0.12 ± 0.018

0.24 ± 0.027

0.18 ± 0.024

0.26 ± 0.030

PoCM

0.23 ± 0.027

0.16 ± 0.021

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-

  1. a In cases where less then L/10 predictions where reported by GARP, the calculation was repeated starting with the top 10% of scores. This was necessary for no more then five families in predicting contacts within the core.
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BMC Bioinformatics

ISSN: 1471-2105

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