Table 2 Runtimes for different applications of ClustDB to 1377 Medicago BACs and their complementary sequences (324 MB of sequence)
From: Simultaneous identification of long similar substrings in large sets of sequences
W | K | Runtime | matches |
|---|---|---|---|
50 | 5 | 00:25:05 | 849 |
50 | 10 | 00:35:35 | 949 |
50 | 15 | 00:42:57 | 963 |
50 | 20 | 00:51:32 | 995 |
80 | 5 | 00:38:31 | 826 |
80 | 10 | 00:57:29 | 924 |
80 | 15 | 01:12:40 | 951 |
80 | 20 | 01:28:31 | 968 |
100 | 5 | 00:50:45 | 823 |
100 | 10 | 01:12:37 | 917 |
100 | 15 | 01:34:00 | 951 |
100 | 20 | 01:50:46 | 968 |
100 | 30 | 02:20:48 | 1015 |