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Table 4 Match quality of overlaps between the BACs shown in Figure 4

From: Simultaneous identification of long similar substrings in large sets of sequences

BAC1

BAC2

overlap

gaps1

gaps2

errors

AC161749+

AC150776+

19072

4

1

6

AC150776+

AC148343+

21493

0

0

0

AC148343+

AC125368+

10907

0

0

0

AC148343-

AC146751+

1134

0

1

13

  1. Columns 1 and 2 provide BAC identifiers with + for direct strand and - for complement strand, column 3 provides alignment length, and columns 4–6 show gaps and alignment errors including gaps. Hence, the number of aligned nucleotides is given by overlap-gaps1 for BAC1 and overlap-gaps2 for BAC2.